Jalapeño Cheddar Sourdough Bagels

Featured in Easy Breakfast Ideas.

These Jalapeño Cheddar Sourdough Bagels offer a spicy twist on the classic bagel, combining the tangy flavor of sourdough with sharp cheddar and zesty jalapeños. The recipe utilizes sourdough starter (either discard or active) with bread flour to create a stiff, chewy dough that's shaped into rings, boiled briefly in honey-sweetened water, then topped with shredded cheddar and jalapeño slices before baking. While the process requires patience with a total time of 17 hours (mostly fermentation), the actual hands-on work is straightforward. The result is 11 perfectly chewy bagels with crisp exteriors, golden-brown bubbly cheese, and just the right amount of heat from the jalapeños.
Mina cooking in her kitchen
Updated on Fri, 14 Mar 2025 04:30:47 GMT
A plate of delicious pizza with peppers and cheese. Pin it
A plate of delicious pizza with peppers and cheese. | lastminrecipes.com

The moment you slice into a fresh Jalapeño Cheddar Sourdough Bagel, you're greeted with an enticing aroma that combines the complex tang of sourdough with the savory notes of melted cheddar and the bright, spicy scent of jalapeños. Each bite delivers a perfect textural contrast—the distinctive chewy crust gives way to a dense yet tender interior studded with pockets of molten cheese and zesty pepper pieces. This isn't just a bagel; it's a harmonious fusion of traditional sourdough bagel-making techniques with bold, southwestern-inspired flavors that transform breakfast into something truly extraordinary.

Last weekend, I made these for a family brunch, and my brother-in-law, who typically grabs store-bought bagels on his way to work, declared them 'worth waking up early for.' Watching everyone's eyes light up as they pulled apart the cheese-crusted tops was just as satisfying as the bagels themselves.

Essential Ingredients and Selection Tips

  • Sourdough Starter: Use an active, bubbly starter at its peak for best results. If using discard, supplement with ¼ teaspoon active dry yeast per cup of flour.
  • Bread Flour: The higher protein content (12-14%) is crucial for developing the chewy texture bagels are known for.
  • Cheddar Cheese: Opt for a sharp or extra-sharp cheddar for pronounced flavor that stands up to the sourdough tang.
  • Jalapeños: Fresh jalapeños provide bright heat and vibrant color, while pickled offer consistent spice level and longer shelf life.
A plate of cheese and jalapeno bagels. Pin it
A plate of cheese and jalapeno bagels. | lastminrecipes.com

Detailed Cooking Instructions

Prepare Your Starter:
Use 150g active sourdough starter at peak activity, or supplement discard with 1 tsp yeast in 2 tbsp warm water.
Create the Dough Base:
Mix 300g water, 500g bread flour, 10g salt, and 15g sugar in a stand mixer. Knead for 5-7 minutes until smooth.
Develop Structure and Flavor:
Hand knead for 2-3 minutes, then form into a ball and let rise in a warm spot for 4-6 hours.
Prepare Add-ins:
Grate 150g sharp cheddar and slice 3-4 jalapeños. Set aside 1/3 of the cheese and jalapeño rings for topping.
First Fold and Rest:
Gently deflate dough, stretch into a rectangle, and sprinkle with cheese and jalapeños. Fold, then rest for 30 minutes.
Divide and Pre-shape:
Divide into 8 portions (~115-120g each), form into balls, and let rest for 15 minutes.
Shape the Bagels:
Press thumb through center of each ball to form a 1½-inch hole. Alternatively, roll into ropes and connect ends.
Cold Fermentation:
Refrigerate bagels for 12-18 hours for deep flavor development.
Prepare for Baking:
Remove from fridge and let stand for 45-60 minutes. Preheat oven to 450°F.
Boil the Bagels:
Boil in sweetened water (1 tbsp honey) for 45 seconds per side.
Add Toppings and Bake:
Sprinkle bagels with reserved cheese and jalapeño slices. Bake for 20-25 minutes until golden brown.
Cool and Enjoy:
Let cool for 20 minutes before slicing.

My first attempt at these bagels taught me that patience with the fermentation process yields superior results. I rushed the cold proof once and ended up with bagels that were more like rolls with holes.

Temperature management throughout the process significantly impacts the final product. The dough should visibly increase in volume and feel puffy when gently pressed.

Cheese and jalapeño distribution requires thoughtful technique—folding creates layers of flavor without compromising the dough.

These Jalapeño Cheddar Sourdough Bagels bring together multiple culinary traditions—Polish bagels, Southwestern flavors, and ancient sourdough fermentation.

The contrast between the crunchy cheese crust, chewy exterior, and bursts of spicy jalapeño creates a multi-dimensional eating experience.

These bagels represent the perfect balance between tradition and innovation, blending heritage baking techniques with bold modern flavors.

A tray of cheese and jalapeno bagels. Pin it
A tray of cheese and jalapeno bagels. | lastminrecipes.com

Frequently Asked Questions

→ Can I use sourdough discard for these bagels?
Yes, you can use either sourdough discard or fed, active starter for this recipe. Both will work well, though active starter may give you a slightly better rise.
→ How spicy are these Jalapeño Cheddar Sourdough Bagels?
The spice level depends on how many jalapeño slices you use. The recipe suggests about 4-5 slices per bagel, but you can adjust this to your heat preference. Using pickled jalapeños (as recommended) typically provides moderate heat with great flavor.
→ Can I make these bagels with regular flour instead of bread flour?
While bread flour is ideal for bagels because of its higher protein content that creates chewiness, you can use all-purpose flour in a pinch. The bagels won't be quite as chewy but will still be delicious.
→ How should I store these Jalapeño Cheddar Sourdough Bagels?
Store cooled bagels in an airtight container at room temperature for 2-3 days. For longer storage, slice and freeze them in a freezer bag for up to 3 months. Thaw and toast to enjoy.
→ What can I serve with these bagels?
These bagels are delicious with plain cream cheese, which balances the heat nicely. They also work well with avocado, eggs, or as sandwich bread with turkey or ham. For a spicier option, try jalapeño cream cheese.

Jalapeño Cheddar Sourdough Bagels

Homemade sourdough bagels with a spicy kick from jalapeños and rich cheddar cheese - perfect for breakfast or anytime snacking.

Prep Time
30 Minutes
Cook Time
30 Minutes
Total Time
60 Minutes
By: Mina

Category: Breakfast & Brunch

Difficulty: Intermediate

Cuisine: American

Yield: 11 Servings (11 bagels)

Dietary: Vegetarian

Ingredients

→ For the bagel dough

01 100g sourdough starter (can be discard or fed and bubbly)
02 500g bread flour
03 250g warm water
04 30g sugar
05 10g salt
06 200g cheddar cheese, shredded
07 48 jalapeño slices (pickled), or to taste

→ For boiling the bagels

08 2 liters water
09 40g honey

Instructions

Step 01

Add the sourdough starter, warm water, bread flour, sugar, and salt to the bowl of your stand mixer. Mix until a shaggy dough forms. If mixing by hand, stir the ingredients together until roughly combined. Let the dough rest for about 15 minutes to allow the flour to fully hydrate.

Step 02

Using the dough hook attachment, knead the dough for around 10 minutes until it becomes smooth and supple. This is a stiff dough (similar to sandwich bread dough), so it won't be super elastic, but it should feel smooth and not sticky. Remember to give your stand mixer a break every few minutes if needed. If kneading by hand, be prepared for a workout as this is quite a firm dough.

Step 03

Place the kneaded dough in a lightly oiled bowl and cover with a damp cloth or plastic wrap. Allow it to ferment until doubled in size and noticeably puffy and soft. This can take 8-12 hours at room temperature or overnight in the refrigerator, depending on your starter strength and ambient temperature.

Step 04

Once the dough has risen, divide it into 11 equal pieces weighing approximately 80g each. Shape each piece into a smooth ball by pulling the edges into the center and pinching them together, then rolling on a clean surface to create tension. Poke your finger through the center of each ball to create a hole, then gently stretch the hole until it's about 1-2 inches in diameter (it will shrink back somewhat during proofing).

Step 05

Place the shaped bagels on a parchment-lined baking sheet, leaving space between each one. Cover them with a clean kitchen towel and let them rise until puffy, about 1-2 hours depending on the temperature of your kitchen.

Step 06

When the bagels are nearly done proofing, preheat your oven to 200°C (392°F). Fill a large pot with 2 liters of water and add 40g of honey. Bring the water to a rolling boil.

Step 07

Carefully lower 3-4 bagels at a time into the boiling water. Boil for about 30 seconds on each side. The bagels should float to the surface almost immediately. For extra chewy bagels, you can boil them for up to 2 minutes. Using a slotted spoon, remove the bagels from the water and place them back on the parchment-lined baking sheet.

Step 08

Immediately after boiling, while the bagels are still wet and sticky, sprinkle the shredded cheddar cheese on top and arrange the jalapeño slices. Bake the bagels for 20-25 minutes at 200°C (392°F) until the cheese is golden brown and bubbly, and the bagels are a deep golden color.

Step 09

Remove the bagels from the oven and let them cool on a wire rack for at least 15 minutes before slicing. This allows the crumb structure to set properly. These bagels are delicious with cream cheese, as a sandwich, or simply enjoyed plain!

Notes

  1. You can substitute up to half of the bread flour with whole wheat flour for a more nutrient-dense bagel. You may need to add a little extra water if using whole wheat flour.
  2. Adding non-diastatic malt powder can enhance the color and texture of your bagel crust, giving it a deeper color and chewier texture.
  3. If you prefer not to use honey in the boiling water, you can substitute brown sugar, barley malt syrup, maple syrup, or baking soda.
  4. While a sharp cheddar works best for flavor, you can use any type of cheese you have on hand. Pre-shredded cheese contains anti-caking agents but will work fine in this recipe.
  5. Pickled jalapeños provide the best flavor and texture when baked, but fresh jalapeño slices can be used if preferred.

Tools You'll Need

  • Stand mixer with dough hook (recommended)
  • Large mixing bowl
  • Baking sheets
  • Parchment paper
  • Large stock pot for boiling bagels
  • Slotted spoon
  • Kitchen scale for accurate measurements

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains gluten (bread flour)
  • Contains dairy (cheddar cheese)

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 246
  • Total Fat: 6 g
  • Total Carbohydrate: 37 g
  • Protein: 9 g